The options for these 3: GausCurv FoldInd CurvInd do not exist when I use the -h
Thanks, Catherine
On 1/29/13, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
yes, use the -m or --meas flags. If you run it with -h, you will get help and examples doug On 01/29/2013 04:12 PM, Nucleos P wrote:
Hello again!
Thank you for all your help so far. Just one more question now... is there a way to specify these values to be pulled using a script:
GausCurv FoldInd CurvInd
...??
Thanks, Catherine
On 1/23/13, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
They must be in a single folder and the $SUBJECTS_DIR env variable must be set to that folder. If you know a little unix, you can set up folders with symbolic links to subjects' true directories.
doug
On 01/23/2013 02:58 PM, Nucleos P wrote:
Thank you for your help Doug! I was trying to specify the path to get to the subjects. Do I have to have all the subjects in a folder called 'subjects'? I know the naming conventions are important. Thanks again, Catherine
On Fri, Jan 18, 2013 at 6:31 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
actually, looking at your cmd line more I see that you have slashes (/) in the subject names. The argument to --subjects should just be alist of name. See the help (aparcstats2table -h) for examples. doug
On 01/18/2013 04:58 PM, Nucleos P wrote: > Hello experts: > > Can someone please help me understand what I am doing wrong?This is > the first time I am trying this command and it will not work... > > COMMAND: aparcstats2table --subjects /RGS4_31p/rgs0868_raw > /RGS4_31p/rgs0871_raw /RGS4_31p/rgs0883_raw/ /RGS4_31p/rgs1194_raw144/ > /RGS4_31p/rgs1311a/ /RGS4_31p/rgs1370a/ /RGS4_31p/rgs1383a/ -t > RGS4_31p/aparc.volume.rh -m volume --hemi=rh > > PATH: [/usr/local/freesurfer/subjects/RGS4_31p/rgs0868_raw/stats]:pwd > /usr/local/freesurfer/subjects/RGS4_31p/rgs0868_raw/stats > > ERROR: SUBJECTS_DIR : /usr/local/freesurfer/subjects > Parsing the .stats files > ERROR: The stats file /RGS4_31p/rgs0868_raw/stats/rh.aparc.stats is > not found or is too small to be a valid statsfile > Use --skip flag to automatically skip bad stats files > > > Thank you, > Catherine > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/