26 Sep
2017
26 Sep
'17
10:04 a.m.
Hi Gabor
you don't want to specify -noaseg. That tells recon-all not to use the aseg. I think autorecon2-cp and autorecon3 should do the trick
cheers Bruce On Tue, 26 Sep 2017, Gabor Perlaki wrote:
Dear Bruce,
I've corrected the lateral ventricles in the aseg.presurf.mgz and ran "recon-all -autorecon2-noaseg -autorecon3 -subjid". Although the labels in aseg.mgz is fine the surfaces (and midline cut) remained bad. Any other idea how to correct this type of error?
Best Regards, Gabor