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Thank you! --Donna
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of "Douglas N. Greve" dgreve@mgh.harvard.edu Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Sunday, May 16, 2021 at 9:59 AM To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Sulcus represented in wm.mgz filled in lh.white
* External Email - Caution * It is possible. Try running defect-seg to see where the defects are. Run it with --help to get more info On 5/13/2021 2:20 PM, Dierker, Donna wrote:
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External Email - Use Caution Hi freesurfer experts,
I have some cases where sulci near the occipital pole are reflected in the wm.mgz, but are filled in the white surface. Attached is a capture showing the sulcus near the image center, where the crosshairs are located.
Might the topology fixer have filled in this sulcus, to reduce topological errors? This was generated using recon-all -all, freesurfer 6.0, ubuntu 18.04.3.
Thanks,
Donna
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