Doug,
Thanks for the response. It turns out that I was leaving off the -mgz flag (as another helpful user pointed out). Everything seems to be working now.
Thanks again, Avram
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Avram Holmes Department of Psychology Harvard University 1210 William James Hall Phone:(617) 495-0790 33 Kirkland Street Fax:(617) 495-3728 Cambridge, MA 02138, USA Email: holmes@fas.harvard.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
On Fri, 1 Jun 2007, Doug Greve wrote:
Can you run it with -debug and send me the result?
Avram Holmes wrote:
FreeSurfer Folks,
I am attempting to look at some data with tkmedit-sess
tkmedit-sess -analysis LowTraumaSPMHRF -contrast all_v_fix -d . -s FPPREW09 -map sig -fsd bold
but I am getting the following error.
corRead(): can't open file /exp/REfMRI/fMRI_FPPREW/structural//FPPREW09/mri/orig/COR-.info
Error: Loading volume orig
Couldn't read the anatomical volume.
Tkmedit couldn't read the volume you specified. This could be because the image format wasn't recognized, or it couldn't find the proper header, or the file(s) were unreadable, or it was the wrong size.
I can look at the data with tkmedit (without the sess) loading all the files manually. I have tried the tkmedit-sess several different ways but I always get an error. Does anyone have an idea about how I get this to work?
Thanks, Avram
Avram Holmes Department of Psychology Harvard University 1210 William James Hall Phone:(617) 495-0790 33 Kirkland Street Fax:(617) 495-3728 Cambridge, MA 02138, USA Email: holmes@fas.harvard.edu
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