Hi Aicha,
We do have a pipeline and I am trying to get it released by the end of the year.
You should be able to build your own template independent from the adults, but you will not be able to just plug this new one in to the adult processing pipeline.
Lilla
On Mon, 27 Nov 2017, Dijkshoorn, A.B.C. (Aicha) wrote:
Dear all,
I want to build my own neonatal control reference template (n=35)to investigate cortical thickness measures and compare these to neonates with a rare type of bleeding. I read that freesurfer uses an adult reference atlas, but that a neonatal-infant (0-2y) is being made/has been made.
Is this new pipeline yet available in freesurfer? And can I build my own reference template in FREESURFER without interference from an adult brain template?
Kind regards,
Aicha Dijkshoorn
Stagiaire Onderzoek & Onderwijs | Divisie Vrouw en Baby, Neonatologie
Universitair Medisch Centrum Utrecht | Flexruimte voor Verpleegkundigen & Medisch personeel, afdeling Neonatologie | 3508 AB UTRECHT