External Email - Use Caution
Dear Jennifer,
if your nifti1 files are named 'brain_nii.hdr' and 'brain_nii.img', try the following:
mri_convert brain_nii --out_type nii brain2.nii
Best,
Tim
On May 16, 2019 at 12:38 PM jennifer sorinas jenny_8mzn@hotmail.com wrote:
External Email - Use CautionDear Tim,
Thanks for your response. I'm sure that the command is mri-convert (I was using it few months ago without problems). Btw, we are experiencing problems also with the recon-all command at different computers. I don't know which is the error, any more ideas?
Best, Jennifer
De: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu en nombre de Tim Schäfer ts+ml@rcmd.org Enviado: jueves, 16 de mayo de 2019 11:50 Para: Freesurfer support list Asunto: Re: [Freesurfer] mri_convert issues
External Email - Use CautionDear Jennifer,
could it be that you are confusing `mri_convert` and `mris_convert` (note the 's')?
Best,
Tim
On May 16, 2019 at 10:58 AM jennifer sorinas jenny_8mzn@hotmail.com wrote: I was trying to convert nifti1 files (.hdr and .img) to nii files using the command: > mri_convert -i input.hdr -it nifti1 -ot nii -o output.nii.gz But this error pop-up: mri_convert.bin: unknown flag '-i input.hdr'
The same command was working on my unit a few months ago. Does anybody know wha's going on?
Thank you very much. Best, Jennifer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Liebe Grüße,
Tim