20 Apr
2012
20 Apr
'12
4:12 p.m.
I have not done any manual interventions. I would like to re-run recon-all with different expert options in mri_normalize, and -skullstrip, and -mprage, and wanted be sure that my changes would be reflected in the downstream output. -
On Fri, Apr 20, 2012 at 12:52 PM, Joshua Lee jkilee@ucdavis.edu wrote:
If I were to want to re-run a recon-all completely fresh on a subject, what do I need to do aside from creating a new subject directory?
I had previously thought that by adding the -all flag, all old files would be over written (i.e. overwrite with a new brainmask.mgz). I want everything fresh. Does the -clean flag do it all? Thanks Josh