Hi Nazanin
no, sorry, that isn't possible. Our accuracy is improved by the fact that we model all subcortical structures simultaneously.
As for your second question you need to be more specific. Are you finding some inaccuracies that you want to correct?
cheers Bruce
On Sun, 19 Jun 2016, N Saf wrote:
Dear Freesurfer,
I wonder if it is possible to segment just one sub-cortical structures like hippocampus by changing the algorithm (e.g. according to spatial prior knowledge divided the image to some sub-images and do analysis just on that sub-image which we sure the hippocampus located)and by that reducing the processing time ? and another general question I have is that in sub-cortical segmentation commands 1to12 commands of -all flag which parameters can I change to affect the outputs?
Sincerely, Nazanin