It looks like it found something that it thinks is a DWI parameter but isn't, and it is causing it to fail. Can you send me one of the dicoms? In the mean time, if you
setenv FS_LOAD_DWI 0
then the error should go away
On 2/28/17 8:33 AM, Gustav Mårtensson wrote:
Hi,
I have a problem when executing the following command on images scanned on 1.5T Philips (Intera) in FS 6.0:
recon-all -i 0e242a36-5390-4358-9f92-eb9f62c48124/ADNI_032_S_0187_MR____________MPRAGE__br_raw_20060213164320687_1_S11617_I11073.dcm -subjid 4450a7a0-27e9-42bc-99ab-1c15519ad9a4 -all -mprage -qcache -hippocampal-subfields-T1 -brainstem-structures -cw256
which during mri_convert produces the error:
ERROR: GetDICOMInfo(): dcmGetDWIParams() 7
DICOMs from other scanners works fine as far as we know. When processing them through 5.3.0 we didn't get any errors like this, regardless of scanner If we just copy the mri_convert binary file from FS 5.3.0 to FS 6.0 the errors disappears. Would this be the recommend approach to solve our issues?
We are running on Ubuntu 16.04 LTS with FS version freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c. I've included recon-all.log case it is of interest.
Thank you for your help!
-- *Gustav Mårtensson* | PhD student Division of Clinical Geriatrics Department of Neurobiology, Care Sciences and Society Karolinska Institutet
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer