External Email - Use Caution
Hi ,
I have used the following call starting at Freesurfer 5.3
/usr/local/tools/freesurfer/bin/recon-all -norandomness -openmp 4 -sd LAB_S01541/standard/20180307_4541_03072018/structural/freesurfer7 -autorecon1 -noskullstrip -no-isrunning -s LAB_S01541_standard_20180307_4541_03072018 -rng-seed 1234
It is still working with Freesurfer 7.1.1 but we now tried updating to 7.3 and it is failing (on the same case). Looking at the recon-all.log it seem that ma_ca_register is not called anymore so that I get the following error message
ERROR: cannot find or read transforms/talairach.m3z
(see attached recon-all .log)
Do I have to add flags ? I need to run with -noskullstrip
Best,
Kilian