Dear freesurfers, I tried running hippocampal segmentation using the Dev version 6 on launchpad. I get the following error message: I ran the recon-all command yesterday and it worked fine.
Cheers! Lauri Tuominen
INFO: FreeSurfer build stamps do not match Subject Stamp: freesurfer-Linux-centos6_x86_64-stable-v6-beta-20160805 Current Stamp: freesurfer-Linux-centos6_x86_64-stable-v6-beta-20160809 INFO: SUBJECTS_DIR is /autofs/space/colbert_001/users/ljt22/Feargen2/SUBJECTS_DIR Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/stable6 -rw-rw-r-- 1 ljt22 dinahgp 490999 Aug 9 09:26 /autofs/space/colbert_001/users/ljt22/Feargen2/SUBJECTS_DIR/iaon/scripts/recon-all.log Linux compute-0-57 2.6.32-573.18.1.el6.x86_64 #1 SMP Tue Feb 9 22:46:17 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux `/autofs/cluster/freesurfer/centos6_x86_64/stable6/bin/recon-all' -> `/autofs/space/colbert_001/users/ljt22/Feargen2/SUBJECTS_DIR/iaon/scripts/recon-all.local-copy' #-------------------------------------------- #@# Hippocampal Subfields processing (T2 only) left Tue Aug 9 13:11:58 EDT 2016
/usr/local/freesurfer/stable6/bin/segmentSF_T2.sh /usr/local/freesurfer/stable6/MCRv80 /usr/local/freesurfer/stable6 iaon /autofs/space/colbert_001/users/ljt22/Feargen2/SUBJECTS_DIR /autofs/space/colbert_001/users/ljt22/Feargen2/subjects/iaon/anat/012/T2.mgz left T2_analysis2
See log file: /autofs/space/colbert_001/users/ljt22/Feargen2/SUBJECTS_DIR/iaon/scripts/hippocampal-subfields-T2.log ------------------------------------------ Setting up environment variables --- LD_LIBRARY_PATH is .:/usr/local/freesurfer/stable6/MCRv80/runtime/glnxa64:/usr/local/freesurfer/stable6/MCRv80/bin/glnxa64:/usr/local/freesurfer/stable6/MCRv80/sys/os/glnxa64:/usr/local/freesurfer/stable6/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/usr/local/freesurfer/stable6/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/server:/usr/local/freesurfer/stable6/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/client:/usr/local/freesurfer/stable6/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64: Warning: application is running on a locale different from the original platform locale. Error using segmentSubjectT1_autoEstimateAlveusML Too many input arguments.
MATLAB:TooManyInputs Warning: Unable to open display 'localhost:48.0'. You will not be able to display graphics on the screen. #-------------------------------------------- #@# Hippocampal Subfields processing (T2 only) right Tue Aug 9 13:12:06 EDT 2016
/usr/local/freesurfer/stable6/bin/segmentSF_T2.sh /usr/local/freesurfer/stable6/MCRv80 /usr/local/freesurfer/stable6 iaon /autofs/space/colbert_001/users/ljt22/Feargen2/SUBJECTS_DIR /autofs/space/colbert_001/users/ljt22/Feargen2/subjects/iaon/anat/012/T2.mgz right T2_analysis2
See log file: /autofs/space/colbert_001/users/ljt22/Feargen2/SUBJECTS_DIR/iaon/scripts/hippocampal-subfields-T2.log ------------------------------------------ Setting up environment variables --- LD_LIBRARY_PATH is .:/usr/local/freesurfer/stable6/MCRv80/runtime/glnxa64:/usr/local/freesurfer/stable6/MCRv80/bin/glnxa64:/usr/local/freesurfer/stable6/MCRv80/sys/os/glnxa64:/usr/local/freesurfer/stable6/MCRv80/sys/java/jre/glnxa64/jre/lib/amd64/native_threa/pbs/ljt22/pbsjob_59.o12129908