On 03/15/2014 01:33 AM, charujing123 wrote:
Hi doug and other FS experts, Thanks doug. I have 2 new questions: 1,What you told me is generate a hemisphere. So there is only one hemisphere I can see in the AFNI?
You have to run mri_surf2vol for each hemisphere, but you can merge them together. See the --help for surf2vol
2,After typing this code: "mri_surf2vol --surfval rh.36sb.10.mgh --hemi rh --fillribbon --subject fsaverage --template /mnt/sdb1/psylab16/BACKUP/freesurfer/freesurfer/subjects/fsaverage/mri/orig --o test.nii." the command window echo this error message: "gdiagno = -1 A volume registration file must be supplied"
Have you looked at the help? Run mri_surf2vol with --help doug
Thanks. All the best. Rujing Zha 2014-03-13
charujing123
*发件人：*Douglas Greve greve@nmr.mgh.harvard.edu *发送时间：*2014-03-12 23:00 *主题：*Re: [Freesurfer] convert sig.mgh into *.nii *收件人：*"freesurfer"freesurfer@nmr.mgh.harvard.edu *抄送：*
Use mri_surf2vol to do this. Soemthing like
mri_surf2vol --surfval rh.36...mgh --hemi rh --fillribbon --subject fsaverage --template $SUBJECTS_DIR/fsaverage/mri/orig --o yourvolume.nii
doug
On 3/11/14 10:10 PM, charujing123 wrote:
Hi Bruce, Thanks Bruce. I knew that code, but I have no idea to deal with my problem after reading the help. Would you please tell me how to use mri_surf2vol after I describe my problem details? I have a file named rh.36sb.score.thickness.10.mgh which is created from the "mris_preproc --fsgd $FSGDFILE --target fsaverage --hemi $style --meas thickness --out ${style}.${FSGDFILE%_*}.00.mgh". I want to convert this file into nii format volume-based, so I can read it by AFNI. Thanks. All the best. Rujing Zha 2014-03-12
charujing123
*发件人：*Bruce Fischl fischl@nmr.mgh.harvard.edu *发送时间：*2014-03-12 09:44 *主题：*Re: [Freesurfer] convert sig.mgh into *.nii *收件人：*"charujing123"charujing123@163.com *抄送：*"freesurfer@nmr.mgh.harvard.edu"freesurfer@nmr.mgh.harvard.edu try mri_surf2vol with the output volume named .nii cheers Bruce On Wed, 12 Mar 2014, charujing123 wrote:
Hi doug, Thanks doug. I try this code, but it represent two dimension for each subject
data when
loaded in the AFNI. Is there any code to volume-based conversion
from mgh to
nii? All the best. Rujing Zha
2014-03-12
charujing123
发件 人：Douglas N Greve greve@nmr.mgh.harvard.edu 发送时间：2014-03-12 00:16 主 题：Re: [Freesurfer] convert sig.mgh into *.nii 收件 人："freesurfer"freesurfer@nmr.mgh.harvard.edu 抄送：
mri_convert file.mgh file.nii
doug
On 03/11/2014 05:55 AM, charujing123 wrote:
Hi FS experts, I want to extract time course from sig.mgh. But the *.y.ocn.mgh
cannot
be created. So I want to view it in other formats, such as nii.
So how
to convert it into nii format. Thanks. All the best. Rujing Zha 2014-03-11
?? ?> charujing123
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