Hi Chris,
This sounds great! How does it deal with the FreeSurfer license? I know that the FreeSurfer team depends on licenses to keep track of the number of users (a key component to justifying their work when applying for grants). I'm looking forward to trying it out!
Thanks, Dan
On Tue, Aug 9, 2016 at 12:37 PM, Chris Filo Gorgolewski chris.gorgolewski@gmail.com wrote:
Dear all, I have created a Docker image with Freesurfer distribution (and all required dependencies).
Features:
Only requires Docker to run (works on Linux, Mac and Windows - does not suffer from the VirtualBox bug) understands BIDS formatted datasets performs recon-all on all subjects allows you to run each subject independently (and potentially in parallel) automatically performs longitudinal analysis when multiple sessions are detected creates custom group level template for your study can be easily converted to a Singularity image using docker2singularity tool and run on your local HPC/cluster
You can find more information here: https://github.com/BIDS-Apps/freesurfer
Please let me know what do you think!
Best, Chris
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