9 Mar
2017
9 Mar
'17
3:24 p.m.
Hi all,
Suppose you have a sub-pipeline:
$ recon-all -s $SUBJ -i $T1 -all $ bbregister --s $SUBJ --mov $EPI --init-fsl --t2 --reg bbreg.dat --fslmat fsl.mat
Now `bbreg.dat`/`fsl.mat` is registered to `$SUBJECTS_DIR/$SUBJ/mri/T1.mgz`; what's the best way to register to $T1?
I've tried:
$ tkregister2 --no-edit --mov $EPI --reg bbreg.dat --targ $T1 --fslregout adjusted.mat
And that's clearly wrong, but I'm kind of stuck on where to go from here. Anybody see where I'm going wrong?
Thanks, Chris