6 Mar
2013
6 Mar
'13
11:16 a.m.
Hi VP
sorry, the subcortical stuff is needed to automate the cortical surface modeling, so you need teh whole thing.
We do distribute matlab scripts for reading the surfaces in (read_surf.m).
cheers Bruce On Wed, 6 Mar 2013, Valtina Pouegue wrote:
Hi, I'm a new user of Freesurfer.
- I would like to extract only the cortex cerebrum . So I think I don't need the complete subcortical segmentation (
20-40 hours). Do you know a way to segment only cortex or only ( cortex+ pial ( left/rigt hemispher)? 2) I already try the complete subcortical segmentation ( about 12 hours, with the recon-all command). Do you know a way to extract only the cortex surface from the software? I would like to get the 3D surface mesh for analysis on Matlab.
Could you help me,
Thanks. VP.