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Hi Bruce,
Yes, we are trying to replicate a recent publication on morphometric similarity networks and are using this subParcellation script (https://github.com/RafaelRomeroGarcia/subParcellation ).
Cheers, Steph
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl Sent: Monday, December 03, 2018 7:06 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [EXTERNAL] Re: [Freesurfer] create ctab from annot
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Hi Stephanie
can you give us some details about how you generated your fine-grained parcellation?
cheers Bruce On Mon, 3 Dec 2018, Winkelbeiner, Stephanie A wrote:
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Hi freesurfer-experts,
I used a customized script that produces a more fine-grained parcellation resulting in an .annot file.
I don’t seem to have a look-up-table (LUT), however.
I tried the following:
- mri_annotation2label à allows me to extract the single labels. But I rather need a .ctab file when I want to read out my values.
- mris_anatomical_stats with the –c flag à to output the colortable as a text file I first need the .ctab file.
Is there a way to get the LUT in a text file or the .ctab file just from the annotation file?
Thanks a lot in advance!
Cheers,
Stephanie
Stephanie Winkelbeiner, MSc
Research Coordinator
Psychiatry Research
Zucker Hillside Hospital
75-59 263 Street
Glen Oaks, NY 11004
Tel: (718) 470-4588
Email: swinkelbei@northwell.edu
Northwell Health
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