External Email - Use Caution
Hello Alex, If you want to use the Finder to directly launch the freeview *application*, then I would double click on an application bundle (named *.app or in this case Freeview.app) which is directly under /Applications/freesurfer/7.1.1. You can drag the application icon into your dock to run Freeview from there. The shell script under /Applications/freesurfer/7.1.1/bin is usually run from the command line by typing “freeview” in a terminal window after you have setup your shell environment (set FREESURFER_HOME and source the freesurfer setup script which sets/modifies PATH, etc.). With everything set in the terminal window shell environment, then running the freeview script from the command line will launch the Freeview.app - see below..
- R. Open a terminal window and at the prompt type “bash”, then do,
Mac:~> export FREESURFER_HOME=/Applications/freesurfer/7.1.1 Mac:~> source $FREESURFER_HOME/SetUpFreeSurfer.sh-------- freesurfer-darwin-macOS-7.1.1-20200726-8b40551 --------Setting up environment for FreeSurfer/FS-FAST (and FSL)FREESURFER_HOME /Applications/freesurfer/7.1.1FSFAST_HOME /Applications/freesurfer/7.1.1/fsfastFSF_OUTPUT_FORMAT nii.gzSUBJECTS_DIR /Applications/freesurfer/7.1.1/subjectsMNI_DIR /Applications/freesurfer/7.1.1/mni Mac:~> which freeview/Applications/freesurfer/7.1.1/bin/freeview ....then the freeview application should launch when you type ... Mac:~> freeview … and you can run all the other commands under $FREESURFER_HOME/bin ...On Sep 16, 2020, at 03:17, Alex White <alexander.l.white@gmail..com> wrote: External Email - Use Caution Hello again dear Freesurfer experts I recently updated to v7.1.1, in order to get the latest version of Freeview. I’m using Mac OS 10.15..6. Freeview seems to start once each time I boot up my machine, but if I quite it, I can’t re-start it again (until re-booting the machine). In the terminal I get an error like this: /Applications/freesurfer/7.1.1/bin/freeview: line 2: 6667 Segmentation fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@“The number after “line 2” isn’t always the same. If I try to start Freeview by clicking on its icon, I get a window that says, “freeview quit unexpectedly.” I can send you the full crash report if you like. Any advice? Thanks again, Alex White _______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail..nmr.mgh.harvard.edu/mailman/listinfo/freesurfer