Hi Antonella, what level of detail do you want? I think that most people are reporting MNI coordinates. doug
On 2/13/12 2:44 PM, Antonella Kis wrote:
Hi Doug,
I will be very grateful if you give me some directions regarding how I can get my clusters location ( my output is too general telling me just Left-Cerebral-White-Matter and Right-Cerebral-White-Matter) and the coordinates (MNI) when I run the:
mri_volcluster --in GroupAnalysis_pos.glmdir/contrast/sig.mgh --mask GroupAnalysis_pos.glmdir/mask.mgh --no-fixmni --cwsig GroupAnalysis_pos.glmdir/contrast/permcsd.sig.cluster.mgh --sum GroupAnalysis_pos.glmdir/contrast/permcsd.sig.cluster.summary --ocn GroupAnalysis_pos.glmdir/contrast/permcsd.sig.ocn.mgh --cwpvalthresh .09 --seg cvs_avg35 aseg.mgz --csdpdf GroupAnalysis_pos.glmdir/contrast/permcsd.pdf.dat --csd GroupAnalysis_pos.glmdir/csd/permcsd.j001-contrast.csd --vwsig GroupAnalysis_pos.glmdir/contrast/permcsd.sig.voxel.mgh
and
mri_segstats --seg permcsd.sig.ocn.mgh --exclude 0 --i /media/2Tra/Antonella_2011/DTI_FS/GLM_CVS/GroupAnalysis-FA-MASKED.ANAT+CVS-to-avg35.nii.gz --avgwf fa.avg.dat --sum permcsd.sig.cluster.summary
Thank you. Antonella