I should add that we're running tkmedit using xvfb since the process is automated and runs without a physical screen.
Flavin
On Jun 22, 2016, at 4:15 PM, Flavin, John jflavin@wustl.edu wrote:
Hi all,
I run the pipelines for the CNDA and various other XNAT installations. We recently updated some of our packages, and our Freesurfer snapshots (generated with tkmedit using a tcl script) have broken.
We're on Centos 6.8. The package that seems to cause the breakage is one of the mesa packages, probably mesa-libGL, upgraded from 10.4.3 to 11.0.7. (But it's hard to be sure that's the exact one because of the dependencies.) That mesa package gets pulled in as a dependency to an X11 update, specifically xorg-x11-server-Xorg upgraded from 1.15.0 to 1.17.4.
We're working now on figuring out a strategy to downgrade these, and some others. It's a little hairy because there are a lot of dependent packages and a lot of affected machines.
If anyone else has seen this, or knows how to fix it, I'd love to hear from you.
John Flavin
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