it should not be taking that long. It must be hanging somewhere. Try re-running it with --debug as the first option. It will print out a bunch of stuff to the screen, but you should be able to see where it hangs (if it does).
doug
Furlong, Carolyn wrote:
Thanks Doug,
I have tried your suggestion and set the command make_average_subject running again. I has been going for several hours but there is no visible change/activity on the console, is this unusual?.
Also, there are only 13 subjects, how long would you expect this process to take per subject?
Best wishes Carolyn
From: Doug Greve [mailto:greve@nmr.mgh.harvard.edu] Sent: Wed 5/9/2007 6:21 PM To: Furlong, Carolyn Cc: Freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Make_average_subject error
you may be using a version that does not have this option. Try using these
doug
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/make_average_subject ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/make_average_surface
Furlong, Carolyn wrote:
Hi all,
I tried running it again with --no-symlink but this error came up
ERROR: Flag --no-symlink unrecognized.
any advice?
Best wishes Carolyn
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