7 May
2018
7 May
'18
4:20 p.m.
External Email - Use Caution
Thanks.
I have about 40 subjects. The last run went ahead for five days. I have killed it.
What's do you think about the use of PALM in my study (details are listed in previous mails)?
Best regards,
Stefano
Il 7 maggio 2018 alle 19.48 "Douglas N. Greve" <dgreve@mgh.harvard.edu> ha scritto: It looks right. How many subjects do you have? You can also check on the progress by looking at the csd files in the glmdir/csd folder On 05/03/2018 11:30 AM, stdp82@virgilio.it wrote: > > >Hi list, I'm running the follow command lines: 1) mri_glmfit --y ces.nii.gz --cortex --surf fsaverage rh --glmdir MMSE.wls --nii.gz --fsgd g1v1_MMSE.fsgd dods --C intercept.mtx --C slope.mtx --eres-save 2) mri_glmfit-sim --glmdir MMSE.wls --perm 1000 2.0 abs --cwp 0.05 --bg 1 --3spaces the computation N.2 (mri_glmfit-sim) is going ahead from two days... ...Poll 16733 job 1 Sun Apr 29 15:58:41 CEST 2018 I'm suspecting that some what in command lines is wrong... Please could you check it? Do you think that for my experimental question (I aiming to perform a within group correlatation between the thickness or FC and MMSE scores) should I use also PALM within mri_glmfit-sim computation? Thanks Best regards Stefano > > >Il 24 aprile 2018 alle 19.39 Douglas Greve <dgreve@mgh.harvard.edu> ha scritto: Try permutation http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MultipleComparisonsV6.0Perm On 4/24/18 8:21 AM, stdp82@virgilio.it <mailto:stdp82@virgilio.it> wrote: > > > > > >Hi, I'm performing a group analysis. I would like to investigate a simple correlation analysis within group, aiming to map the clusters showing correlation between the FC and the neuropsychological test scores (e.g. MMSE). Overall, the NPS test have not a normal distribution of their scores and, thus, parametric computation should be discouraged. Thanks Stefano > > > > > >Il 19 aprile 2018 alle 18.11 "Douglas N. Greve" <dgreve@mgh.harvard.edu> <mailto:dgreve@mgh.harvard.edu> ha scritto: I'm not sure what you mean. Can you elaborate? Is this an individual analysis or a group analysis? On 04/18/2018 10:10 AM, stdp82@virgilio.it <mailto:stdp82@virgilio.it> wrote: > Hi list, which the best way to perform a whole-brain correlation of the FC assessed by FS-FAST with the volumetic or neuropsychological outcomes? Please note that my question is specifically addressed to those factors (neuropsycholgical scores or volume of seed) did not show a normal distribution and that cannot be trasformed. Thanks Kind regards Stefano _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. > > > >> > >_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. > >>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer