24 Jan
2021
24 Jan
'21
5:01 p.m.
External Email - Use Caution
Hell Freesurfers,
When running recon-all on a T1 image, I keep getting the error "Command terminated by signal 11" during mris_fix_topology. After manually editing brainmask.mgz and wm.mgz, I made sure that there were no larger defects and ran recon-all again. Still terminated by signal 11.
Next, I tried: recon-all -autorecon2 -autorecon3 -skullstrip -no-wsgcaatlas -s hires -clean-bm
:"Command terminated by signal 11". This time mris_fix_topology got through lh and got stuck on rh.
Any idea on what to try next?
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