Dear All,
I am sorry to post this again. Any help will be greatly appreciated. I am struck as I am unable to run the recon-all step.
Thanks Venkat
---------- Forwarded message ---------- From: Venkateswaran Rajagopalan venkateswaran@hyderabad.bits-pilani.ac.in Date: Fri, Jun 20, 2014 at 5:14 PM Subject: mpr2mni305 failed, see transforms/talairach_avi.log To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu
Hi All,
I am getting the the following error when I run recon-all -subjid E368 -autorecon1
ERROR: mpr2mni305 failed, see transforms/talairach_avi.log
Here is what talairach_avi.log says
/home/administrator/Desktop/freesurfer/subjects_dir/E368/mri /usr/local/freesurfer/bin/talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ Linux administrator-HP-Pro-3330-MT 3.13.0-24-generic #46-Ubuntu SMP Thu Apr 10 19:08:14 UTC 2014 i686 i686 i686 GNU/Linux Fri Jun 20 17:06:38 IST 2014 mri_convert orig_nu.mgz talsrcimg.img $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from orig_nu.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to talsrcimg.img... Analyze Output Matrix -1.000 0.000 0.000 129.000; 0.000 0.000 1.000 -129.000; 0.000 -1.000 0.000 122.500; 0.000 0.000 0.000 1.000; -------------------- INFO: set hdr.hist.orient to -1 mpr2mni305 talsrcimg Fri Jun 20 17:06:39 IST 2014 /usr/local/freesurfer/bin/mpr2mni305 talsrcimg $Id: mpr2mni305,v 1.4 2009/06/03 16:01:38 nicks Exp $ target=711-2C_as_mni_average_305
--------------------------------------------------------------------- analyzeto4dfp talsrcimg -O0 -y ---------------------------------------------------------------------
$Id: ifh2hdr.c,v 1.3 2007/05/05 10:45:03 nicks Exp $ Fri Jun 20 17:06:40 2014 Writing: talsrcimg.4dfp.hdr $Id: analyzeto4dfp.c,v 1.2 2007/05/05 00:00:06 nicks Exp $ Reading: talsrcimg.hdr header size 348 bytes hdr.dime.datatype offset=70 value=2 hdr.dime.bitpix offset=72 value=8 hdr.hist.orient offset=252 value=-1 dimensionality 4 dimensions 256 256 256 1 Reading: talsrcimg.img Writing: talsrcimg.4dfp.img Writing: talsrcimg.4dfp.ifh ifh2hdr talsrcimg -r0to255 ori=2
--------------------------------------------------------------------- gauss_4dfp talsrcimg 1.1 ---------------------------------------------------------------------
$Id: gauss_4dfp.c,v 1.3 2009/05/15 21:43:46 nicks Exp $ Reading: talsrcimg.4dfp.img Writing: talsrcimg_g11.4dfp.img image dimensions 256 256 256 padded to 288 288 288 processing volume 1$Id: ifh2hdr.c,v 1.3 2007/05/05 10:45:03 nicks Exp $ Fri Jun 20 17:06:46 2014 Writing: talsrcimg_g11.4dfp.hdr
Writing: talsrcimg_g11.4dfp.ifh including: talsrcimg.4dfp.img.rec in talsrcimg_g11.4dfp.img.rec
--------------------------------------------------------------------- imgreg_4dfp /usr/local/freesurfer/average/711-2C_as_mni_average_305 none talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 4355 ---------------------------------------------------------------------
$Id: imgreg_4dfp.c,v 1.4 2010/02/27 01:41:53 nicks Exp $ imgreg_4dfp: /usr/local/freesurfer/average/711-2C_as_mni_average_305.4dfp.img read error /usr/local/freesurfer/average/711-2C_as_mni_average_305.4dfp.img 256 256 256 1 1.000000 1.000000 1.000000 orientation T byte_order littleendian Reading image: /usr/local/freesurfer/average/711-2C_as_mni_average_305.4dfp.img dimensions: 256 256 256 mmppix: 1.0000 -1.0000 -1.0000 center: 128.0000 -129.0000 -129.0000 ERROR: 'imgreg_4dfp /usr/local/freesurfer/average/711-2C_as_mni_average_305 none talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 4355' failed! status=255 ERROR: mpr2mni305 execution aborted
Any help will be greatly appreciated.
Thanks Venkat