External Email - Use Caution
Hi FreeSurfer experts,
Just bringing this question back up to the top: I analyzed my data following the guidelines on the FreeSurfer Tutorial/Group Analysis page . I am trying to plot the adjusted values (covariates: age, sex, and ICV) for the significant clusters for each of my participants.
Is there a way to extract or calculate the adjusted values for each participant in each cluster after accounting for covariates (age, sex, and ICV)?
Best,
Jessica
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of freesurfer-request@nmr.mgh.harvard.edu freesurfer-request@nmr.mgh.harvard.edu Sent: Saturday, June 23, 2018 11:00 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Freesurfer Digest, Vol 172, Issue 36
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Today's Topics:
1. FreeSurfer Manual Edit Sequence (David S Lee) 2. Using grad_unwarp (James Gullickson)
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Message: 1 Date: Fri, 22 Jun 2018 11:37:44 -0500 From: David S Lee david.s.lee@wisc.edu Subject: [Freesurfer] FreeSurfer Manual Edit Sequence To: freesurfer@nmr.mgh.harvard.edu Message-ID: CAGcZjx8px96eS=O64q5nivBObJP9cqDha3_R87G3GHdjkVQnqA@mail.gmail.com Content-Type: text/plain; charset="utf-8"
External Email - Use Caution
Hello Experts,
When performing manual edits on brain masks, white matter, and gray matter, do I have to strictly follow the sequences(process stages) listed here https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all?
For instance, the link suggests that "autorecon2-pial is used after editing brain volume *after running -autorecon2".
In other words, is it okay to perform "autorecon2-pial" before "autorecon2-wm"?
Thank you for your time, -- David S. Lee Associate Research Specialist Center for Healthy Minds University of Wisconsin - Madison (608) 890-1115