Douglas, thank you very much again. So I can assume it is the lGI for the area (in this case the lobe)?
Thank you again!
On Wed, Apr 18, 2018 at 11:48 PM Douglas Greve dgreve@mgh.harvard.edu wrote:
The "intensity" is the mean value of the input (lh.pial_lgi in this case) averaged over vertices. If you wan the total number, multiply it by the number of vertices or re-run with --accumulate. The area is the surface area of the entire lobe.
On 4/18/18 3:23 PM, Fernanda Hansen P. de Moraes wrote:
Sorry, my mistake.
mri_segstats --annot DA011 lh lobesStrict --i DA011/surf/lh.pial_lgi --sum lh.lobesStrict.annot.pial_lgi.stats
On Wed, Apr 18, 2018 at 4:13 PM Douglas N. Greve dgreve@mgh.harvard.edu wrote:
What is your command line? Also, please remember to post to the list
On 04/18/2018 02:10 PM, Fernanda Hansen P. de Moraes wrote:
Dear Douglas,
thank you.
The code worked, but I didn't understand the result very well. What means intensity? The area, is the ara from the piall_lgi surface (outer surface)?
Thank you again
On Tue, Apr 17, 2018 at 1:07 PM Douglas Greve <dgreve@mgh.harvard.edu mailto:dgreve@mgh.harvard.edu> wrote:
If you run it with --help you will see an example On 4/16/18 7:16 AM, Fernanda Hansen P. de Moraes wrote:Thank you, Douglas, do you have any suggestions on how to make you work? Fernanda On Fri, Apr 13, 2018 at 5:56 PM Douglas Greve <dgreve@mgh.harvard.edu <mailto:dgreve@mgh.harvard.edu>> wrote: that should work, except the command line is not quite right On 4/13/18 4:22 PM, Fernanda Hansen P. de Moraes wrote:Good night, does anyone know if it is possible to calculate the lGI for the ?h.lobesStrict.annot? And if it yes, how can I do it? I've already tried to use: /mri_segstats --annot subjxx/label/lh.lobesStrict.annot --i $SUBJECTS_DIR/subjxx/surf/lh.pial_lgi --sum lh.lobesStrict.annot.pial_lgi.stats/ Thank you! -- Fernanda Hansen P. de Moraes Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Fernanda Hansen P. de Moraes Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- Fernanda Hansen P. de Moraes Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
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Fernanda Hansen P. de Moraes Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz
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Fernanda Hansen P. de Moraes Física Médica | Instituto D'Or de Pesquisa e Ensino | Rede D'Or São Luiz