Re: [Freesurfer] PALS B12

On 12/15/2015 03:19 PM, Woo, Jonghye wrote:

I am trying to a brodmann mask using PALS B12 atlas in fsaverage. I used the following command to create the volume from annotation file. I have two questions associated with it. mri_aparc2aseg --s my_subject --annot PALS_B12_Brodmann --o PALS_B12_Brodmann_Mask.nii --annot-table lh_PALS_B12_table.txt

1. When I visualized the mask, it seems that the labels are not corresponding to the regions (the annot-table is not working). Does anyone know this issue?

Not sure what you mean. The ROIs are not lined up properly? Or when you click on an ROI the name is not correct?

2. In this case, I only used lh table. Then do I need to use rh table again? What should I to incorporate both lh and rh?

Probably an issue with lh_PALS_B12_table.txt . Where did that come from?

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