Hi Catherine,
running them with the normal recon-all command is the first step of the longitudinal pipeline, then create the 'base' (subject template) for each subject and finally run all individual time points again through the -long command.
see https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalProcessing
for the description,
Best, Martin
On 09/02/2013 10:51 PM, Rongxiang Tang wrote:
Hi All,
This may seem to be an easy question, I would just like to confirm...
I have two groups that underwent different types of training and were measured at two time points (before and after training).
My understanding is that I should use the longitudinal scheme in freesurfer to run recon-all?
I have processed all data using normal recon-all command, and was wondering if I should rerun them all with the longitudinal command:
recon-all -subjid <tpNid> -all
Thanks in advance, Catherine
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