I tried running freeview and it aborted
psy-cerebrum-r1:data brainlab$ freeview -f rh.orig
bus error
we are using a Mac Pro 2.26GHz 8 cores mac Os X 10.6.8 RAM : 12 GB with X11 and Xquartz tkmedit works fine
here's the problem report from our machine
Process: freeview.bin [21698] Path: /usr/local/freesurfer/bin/Freeview.app/Contents/MacOS/freeview.bin Identifier: freeview.bin Version: 'latest trunk' ('latest trunk') Code Type: X86 (Native) Parent Process: bash [555]
Date/Time: 2013-01-11 09:16:52.146 -0600 OS Version: Mac OS X 10.6.8 (10K549) Report Version: 6
Interval Since Last Report: 2980979 sec Crashes Since Last Report: 6 Per-App Crashes Since Last Report: 4 Anonymous UUID: 314FF2FE-43B0-4221-BF9A-F4428211ADA0
Exception Type: EXC_BAD_ACCESS (SIGBUS) Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000000000 Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Thread 0 Crashed: Dispatch queue: com.apple.main-thread 0 ??? 0000000000 0 + 0 1 libvtkRendering.5.2.dylib 0x02b3d1a9 vtkCarbonRenderWindow::CreateAWindow() + 281 2 libvtkRendering.5.2.dylib 0x02b3bfa4 vtkCarbonRenderWindow::WindowInitialize() + 52 3 libvtkRendering.5.2.dylib 0x02b3a435 vtkCarbonRenderWindow::Start() + 21 4 libvtkRendering.5.2.dylib 0x02aa11db vtkRenderWindow::DoStereoRender() + 27 5 libvtkRendering.5.2.dylib 0x02aa13a9 vtkRenderWindow::DoFDRender() + 153 6 libvtkRendering.5.2.dylib 0x02aa1832 vtkRenderWindow::DoAARender() + 98 7 libvtkRendering.5.2.dylib 0x02a9fc54 vtkRenderWindow::Render() + 644 8 freeview.bin 0x0011d547 wxVTKRenderWindowInteractor::OnPaint(wxPaintEvent&) + 151 9 freeview.bin 0x00407b53 wxAppConsole::HandleEvent(wxEvtHandler*, void (wxEvtHandler::*)(wxEvent&), wxEvent&) const + 65 10 freeview.bin 0x00452f30 wxEvtHandler::ProcessEventIfMatches(wxEventTableEntryBase const&, wxEvtHandler*, wxEvent&) + 212 11 freeview.bin 0x004532d4 wxEventHashTable::HandleEvent(wxEvent&, wxEvtHandler*) + 204 12 freeview.bin 0x00453f5e wxEvtHandler::ProcessEvent(wxEvent&) + 240 13 freeview.bin 0x003525e3 wxWindow::MacDoRedraw(void*, long) + 975 14 freeview.bin 0x00353985 wxMacWindowControlEventHandler(OpaqueEventHandlerCallRef*, OpaqueEventRef*, void*) + 815 15 freeview.bin 0x00354135 wxMacWindowEventHandler(OpaqueEventHandlerCallRef*, OpaqueEventRef*, void*) + 181 16 com.apple.HIToolbox 0x9527ac0f DispatchEventToHandlers(EventTargetRec*, OpaqueEventRef*, HandlerCallRec*) + 1567 17 com.apple.HIToolbox 0x95279ed6 SendEventToEventTargetInternal(OpaqueEventRef*, OpaqueEventTargetRef*, HandlerCallRec*) + 411 18 com.apple.HIToolbox 0x95279d35 SendEventToEventTargetWithOptions + 58 19 com.apple.HIToolbox 0x952a1e85 HIView::SendDraw(short, OpaqueGrafPtr*, __HIShape const*, CGContext*) + 475 20 com.apple.HIToolbox 0x952a17d9 HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 713 21 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 22 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 23 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 24 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 25 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 26 com.apple.HIToolbox 0x952a1a4c HIView::RecursiveDrawComposited(__HIShape const*, unsigned long, HIView*, CGContext*, unsigned char, float) + 1340 27 com.apple.HIToolbox 0x952a07ff HIView::DrawComposited(short, OpaqueGrafPtr*, __HIShape const*, unsigned long, HIView*, CGContext*) + 873 28 com.apple.HIToolbox 0x952a0445 HIView::Draw(short, OpaqueGrafPtr*, unsigned long) + 83 29 com.apple.HIToolbox 0x952a0395 HIView::Render(unsigned long, CGContext*) + 45 30 com.apple.HIToolbox 0x9529fcdd WindowData::PrepareForVisibility() + 145 31 com.apple.HIToolbox 0x9529f298 _ShowHideWindows + 291 32 com.apple.HIToolbox 0x953020e3 ShowWindow + 79 33 freeview.bin 0x00346f86 wxTopLevelWindowMac::Show(bool) + 280 34 freeview.bin 0x00072060 MainApp::CreateMainWindow() + 96 35 freeview.bin 0x000727b5 MainApp::InitializeGUI() + 581 36 freeview.bin 0x0007301a MainApp::OnInit() + 1898 37 freeview.bin 0x00076abf wxAppConsole::CallOnInit() + 15 38 freeview.bin 0x0042b70c wxEntry(int&, char**) + 110 39 freeview.bin 0x00071f87 main + 23 40 freeview.bin 0x00003406 start + 54
Thread 1: Dispatch queue: com.apple.libdispatch-manager 0 libSystem.B.dylib 0x9a523382 kevent + 10 1 libSystem.B.dylib 0x9a523a9c _dispatch_mgr_invoke + 215 2 libSystem.B.dylib 0x9a522f59 _dispatch_queue_invoke + 163 3 libSystem.B.dylib 0x9a522cfe _dispatch_worker_thread2 + 240 4 libSystem.B.dylib 0x9a522781 _pthread_wqthread + 390 5 libSystem.B.dylib 0x9a5225c6 start_wqthread + 30
Thread 2: 0 libSystem.B.dylib 0x9a522412 __workq_kernreturn + 10 1 libSystem.B.dylib 0x9a5229a8 _pthread_wqthread + 941 2 libSystem.B.dylib 0x9a5225c6 start_wqthread + 30
Thread 0 crashed with X86 Thread State (32-bit): eax: 0x00f101a0 ebx: 0x02b187eb ecx: 0x00000000 edx: 0x00efbd68 edi: 0x02b536f8 esi: 0x0439db10 ebp: 0xbfffc9f8 esp: 0xbfffc9cc ss: 0x0000001f efl: 0x00010206 eip: 0x00000000 cs: 0x00000017 ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037 cr2: 0x00000000
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(???) <8ADB7D19-413E-4499-C874-13C383F97685> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libTrueTypeScaler.dylib 0x9a4fc000 - 0x9a6a3ff7 libSystem.B.dylib 125.2.11 (compatibility 1.0.0) <2DCD13E3-1BD1-6F25-119A-3863A3848B90> /usr/lib/libSystem.B.dylib 0x9a6a4000 - 0x9a6b1ff7 com.apple.NetFS 3.2.2 (3.2.2) <0A53CD10-DBC7-2BE8-34F7-354BE201F6FB> /System/Library/Frameworks/NetFS.framework/Versions/A/NetFS 0x9a6b2000 - 0x9a6ecff7 libcups.2.dylib 2.8.0 (compatibility 2.0.0) <A6C207E3-7B42-926D-9C93-BE3F50B92496> /usr/lib/libcups.2.dylib 0x9a6ed000 - 0x9a7a9fff com.apple.ColorSync 4.6.8 (4.6.8) <920DD017-8B41-7334-E554-A85DB99EBD5A> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ColorSync.framework/Versions/A/ColorSync 0x9a7aa000 - 0x9abc0ff7 libBLAS.dylib 219.0.0 (compatibility 1.0.0) <9D89FCB3-24C9-8FCF-DB49-27B184AC3222> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib 0xffff0000 - 0xffff1fff libSystem.B.dylib ??? (???) <2DCD13E3-1BD1-6F25-119A-3863A3848B90> /usr/lib/libSystem.B.dylib
Model: MacPro4,1, BootROM MP41.0081.B07, 8 processors, Quad-Core Intel Xeon, 2.26 GHz, 12 GB, SMC 1.39f5 Graphics: NVIDIA GeForce GT 120, NVIDIA GeForce GT 120, PCIe, 512 MB Memory Module: global_name AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x8E), Broadcom BCM43xx 1.0 (5.10.131.42.4) Bluetooth: Version 2.4.5f3, 2 service, 19 devices, 1 incoming serial ports Network Service: Ethernet, Ethernet, en0 PCI Card: NVIDIA GeForce GT 120, sppci_displaycontroller, Slot-1 Serial ATA Device: HL-DT-ST DVD-RW GH41N, 283.3 MB Serial ATA Device: WDC WD1001FALS-41K1B0, 931.51 GB USB Device: Keyboard Hub, 0x05ac (Apple Inc.), 0x1006, 0xfd300000 / 2 USB Device: Apple Optical USB Mouse, 0x05ac (Apple Inc.), 0x0304, 0xfd330000 / 4 USB Device: Apple Keyboard, 0x05ac (Apple Inc.), 0x0220, 0xfd320000 / 3 USB Device: USB 3.0 SATA Bridge, 0x2109 (VIA Labs, Inc.), 0x0700, 0xfa200000 / 2 USB Device: BRCM2046 Hub, 0x0a5c (Broadcom Corp.), 0x4500, 0x5a100000 / 2 USB Device: Bluetooth USB Host Controller, 0x05ac (Apple Inc.), 0x8215, 0x5a110000 / 3 FireWire Device: built-in_hub, Up to 800 Mb/sec
Jon Wieser jonwieser@netzero.com
"When the going gets tough, switch to power tools." - Red Green
---------- Original Message ---------- From: Bruce Fischl fischl@nmr.mgh.harvard.edu To: "jonwieser@netzero.net" jonwieser@netzero.net Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] tksurfer - rotate surface with mouse Date: Fri, 11 Jan 2013 09:00:27 -0500 (EST)
Hi Jon
glad to see you are now able to post :>. No, I don't think you can do this in tksurfer due to its age and slow redraw rate. Freeview can do it though.
cheers Bruce On Fri, 11 Jan 2013, jonwieser@netzero.net wrote:
Is it possible to rotate the surface model in tksurfer with the mouse instead of the rotation buttons on the GUI. (i.e. grab the surface model with the mouse and spin it)
Jon Wieser jonwieser@netzero.com
"When the going gets tough, switch to power tools." - Red Green
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