Re: [Freesurfer] recon-all -all finished without error but didn't produce aseg.mgz files

-- On Mon, 12 Jul 2010, aekairys@umich.edu wrote: > > the recon-all.log does not show anything missing, however it is apparent > now that it definitly didn't finish. For most of my subjects it stopped > running at: > > Left_Cerebellum_Cortex (8): linear fit = 1.08 x + 0.0 (26249 voxels, > overlap=0.958) > Left_Cerebellum_Cortex (8): linear fit = 1.08 x + 0.0 (26249 voxels, peak = > 64), gca=64.5 > gca peak = 0.12723 (61) > mri peak = 0.03761 (63) > Right_Cerebellum_Cortex (47): linear fit = 1.02 x + 0.0 (27939 voxels, > overlap=0.963) > Right_Cerebellum_Cortex (47): linear fit = 1.02 x + 0.0 (27939 voxels, peak > = 63), gca=62.5 > gca peak = 0.22684 (88) > mri peak = 0.10929 (95) > Left_Cerebellum_White_Matter (7): linear fit = 1.08 x + 0.0 (8347 voxels, > overlap=0.476) > Left_Cerebellum_White_Matter (7): linear fit = 1.08 x + 0.0 (8347 voxels, > peak = 95), gca=94.6 > gca peak = 0.21067 (87) > mri peak = 0.11382 (93) > Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (7525 voxels, > overlap=0.506) > Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (7525 voxels, > peak = 94), gca=93.5 ****STOPPED RUNNING HERE ******* > > if anyone can recognize this step so I don't have to run full recon again > that would be great or any ideas as to why this happend > > best, > > Anson K. > > University of Michigan > > On Mon, 12 Jul 2010 11:39:10 -0400 (EDT), Allison Stevens > astevens@nmr.mgh.harvard.edu wrote: >> What does the recon-all.log file in the stats dir show for the steps it >> missed? >> Allison > > >