Hi Goulven,
we need to know what the mris_register command line was, and what the mris_ca_label command line was, as well as what version of freesurfer you are running in general.
cheers, Bruce On Fri, 4 Nov 2005, Goulven Josse wrote:
Hi Xiao,
I don't have a recon-all.log file because we used a homemade script implementing freesurfer commands. I attached the corresponding output log file, is this of any help?
If not, I was thinking of using recon-all but, if I understand correctly, it provides by default a parcellation that does not differentiate the very posterior part of the superior temporal sulcus from surrounding areas. Could you tell me how to use recon-all with another parcellation, i guess the one referenced in Fischl, 04, which labels the STS including its posterior portion ?: Destrieux CE, Halgren E, Dale AM, Fischl B, Sereno MI (1998) Variability of the human brain studied on the flattened cortical surface. Soc Neurosci Abstr 24:1164.
thanks a lot goulven