Thanks Nick & Bruce,
Nick - I have high resolution T1W 3D scans, with 1mm voxel size and pretty good grey white matter contrast. Could you put me in touch with those that have used freesurfer on canine brains please?
If I had a canine brain MRI atlas, similar to the Talairach atlas, could I integrate this into Freesufer and use this as my template instead?
Bruce - how do I go about trying the 'monkey stream'?
With thanks, Marjorie.
________________________________________ From: Bruce Fischl [fischl@nmr.mgh.harvard.edu] Sent: Wednesday, 6 July 2011 11:36 PM To: Marjorie Milne Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] FreeSurfer use in dogs
Hi Marjorie,
I don't know of anyone who has used it in dogs, but you could try the monkey stream and see if it works for you (it will disable all the human-specific atlases and such). It will require more manual intervention though
cheers Bruce On Wed, 6 Jul 2011, Marjorie Milne wrote:
Hello Freesurfers,
I would like to use FreeSurfer to analyse brain morphology in dogs but do not know if the techniques can be applied in this species.
Does anyone have experience using FreeSurfer in dogs, and any tips to get the techniques to work?
Regards, Marjorie Milne
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