Hi Joel
I believe they are stored in "tkreg ras" by default. In any case, mri_label2label should let you map them to pretty much any space you like.
cheers Bruce On Fri, 27 Sep 2019, Berger, Joel wrote:
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Hi friendly Freesurfers,
I have seen this question asked, but can't find the answer. When exporting a label from tksurfer for a particular ROI for a subject, the coordinates in the .label document don't match up with any of the coordinates I can view in tksurfer. Is there a way/formula to convert these easily, ideally into MNI coordinates?
I tried loading the label into Matlab with freesurfer_read_label.m converting to Talairach with freesurfer_label2tal.m and then also converting those coordinates using tal2mni.m, but the Talairach or the MNI coordinates do not match with the Talairach/MNI coordinates shown for the corresponding vertices in tksurfer.
Thank you,
Joel
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