Hi,
An oddity re: command syntax for mri_surfcluster.
The --ocp flag writes the file sig.cluster.mgh. However, when I also include the --cwsig flag the file sig.cluster.mgh is not generated.
Currently I run the command twice, once to generate the sig.cluster.mgh, and once to generate the cluster-wise_sig.mgh. I suspect there is a better way.
I am using FreeSurfer 3 stable centos4 mri_surf version 1.26, 2006/02/22