You can try
unsetenv SUBJECTS_DIR /tmp/qdec_project_archive
and set the SUBJECTS_DIR to the right directory again.
Sita.
On Tue, 3 Feb 2009, Lucia Garrido wrote:
Many thanks for your e-mail.
Yes, I've noticed that. But I made sure the SUBJECTS_DIR is the right one. Everything else is running without problems. And if I type cd $SUBJECTS_DIR, it goes to the right folder, which is not that folder on /tmp/qdec_project_archive.
Your SUBJECTS_DIR is set to /tmp/qdec_project_archive, which is probably wrong.
Lucia Garrido wrote:
Dear all,
I'm using Qdec and wanted to map an ROI to all participants in the study, but I always get an error. I've used FS 4.0.2 for recon-all for all subects. Now I'm running stats with FS 4.1.0 (I did 'recon-all -qcache -subjid <sub>' for each person using version 4.1.0). I'm using Debian.the qdec
I've saved the ROI to the SUBJECTS_DIR folder.
The error I get is:
mri_label2label --srclabel rh.mtg1 --srcsubject fsaverage --trgsubject C01_CY --trglabel rh.mtg1 --regmethod surface --hemi rh
srclabel = rh.mtg1 srcsubject = fsaverage trgsubject = C01_CY trglabel = rh.mtg1 regmethod = surface
srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0
SUBJECTS_DIR is /tmp/qdec_project_archive FREESURFER_HOME is /home/lgarrido/freesurfer_v4.1.0/freesurfer Loading source label. Found 240 points in source label. Starting surface-based mapping Reading source registration /tmp/qdec_project_archive/fsaverage/surf/rh.sphere.reg MRISread(/tmp/qdec_project_archive/fsaverage/surf/rh.sphere.reg): could not open file No such file or directory ERROR: could not read /tmp/qdec_project_archive/fsaverage/surf/rh.sphere.reg command failed: mri_label2label --srclabel rh.mtg1 --srcsubject fsaverage --trgsubject C01_CY --trglabel rh.mtg1 --regmethod surface --hemi rh
Many thanks for your help.
Regards,
Lucia
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