There is an error in the instructions emailed below in that the output should be
$FREESURFER_HOME/average/mult-comp-cor/yoursubject/lh/cortex
I've created full instructions here
http://surfer.nmr.mgh.harvard.edu/fswiki/BuildYourOwnMonteCarlo
doug
On 01/21/2014 01:06 PM, Douglas N Greve wrote:
mri_mcsim --o $FREESURFER_HOME/average/mult-comp-cor \ --base mc-z --surface yoursubject lh --nreps 10000
And one for the right hemi too.
This will create a directory structure similar to $FREESURFER_HOME/average/mult-comp-cor/fsaverage
It may take a couple of days to run but once it is done, you don't need to run it again. After that you can just run mri_glmfit-sim
Note, you can put it into a different directory and then spec that folder when you run mri_glmfit-sim with the --cache-dir flag.