Hi Lauren,
You can find the new write_patch.m function here - https://github.com/freesurfer/freesurfer/blob/dev/matlab/write_patch.m
You can install it with:
curl https://raw.githubusercontent.com/freesurfer/freesurfer/dev/matlab/write_pat... > write_patch.m cp write_patch.m ${FREESURFER_HOME}/matlab
best Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of "Dinicola, Lauren" lmd600@g.harvard.edu Reply-To: FS Help freesurfer@nmr.mgh.harvard.edu Date: Monday, August 13, 2018 at 9:19 AM To: FS Help freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] fsaverage6 ?h.cortex.flat.patch files
Thank you!
On Sun, Aug 12, 2018 at 6:49 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edumailto:fischl@nmr.mgh.harvard.edu> wrote: oh, maybe we never got around to writing a write_patch.m. We'll put one together and send it to you Bruce
On Sun, 12 Aug 2018, Dinicola, Lauren wrote: Hi Dr. Fischl, Thank you so much for this response. This is a great idea, but I have not yet been successful with writing out the adjusted structure to a ?h.cortex.flat.patch file. Is there a specific command for writing a patch?
Thank you again,
Lauren
On Wed, Aug 8, 2018 at 3:04 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edumailto:fischl@nmr.mgh.harvard.edu> wrote: sorry, no. You could create them fairly easily from fsaverage7, since the fsaverage6 is a subset of the vertices in 7. Just pick out the locations of the fsaverage6 vertices from the fsaverage7 flat map and write it out as a flat map (easy to do in matlab for example)
On Wed, 8 Aug 2018, Dinicola, Lauren wrote:
> Hi all, > We are hoping to visualize flat maps of surface data sampled to fsaverage6. Do 'flat.patch' files > exist already for fsaverage6? > > Thank you for any help, > > Lauren DiNicola > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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