What is your command line? Try it on a single subject to see if it fails doug
On 08/29/2013 02:00 PM, Pietro De Rossi wrote:
Hi Doug,
It doesn't seem it is failing on a particular subject...or I am not able to get it from the error. Futhermore, nothing changes if I use the --skip flag. What does it mean when it says:
"List index out of range"?
Inviato da iPhone
Il giorno 29/ago/2013, alle ore 19:38, Douglas N Greve greve@nmr.mgh.harvard.edu ha scritto:
Is it failing on one particular subject?
On 08/29/2013 09:38 AM, pietro de rossi wrote:
Dear FreeSurfers,
I am extracting thickness values through the aparcstats2table command line.
Everything works just fine for --hemi lh using the --skip flag.
However, when it comes to the right hemisphere I get
SUBJECTS_DIR : /usr/local/freesurfer/subjects Parsing the .stats files Traceback (most recent call last): File "/usr/local/freesurfer/bin/aparcstats2table", line 321, in <module> parc_measure_map = parsed.parse(options.meas) File "/usr/local/freesurfer/bin/fsutils.py", line 194, in parse parcid = strlist[0] IndexError: list index out of range
I find it weird given that I am extracting thickness values for the same subjects.
Can anybody help me find out what the problem is?
Thank you in advance,
Pietro
-- Pietro De Rossi, MD
Sapienza Università di Roma, Facoltà di Medicina e Psicologia, Dipartimento NESMOS (Neuroscienze, Salute Mentale, Organi di Senso), Ospedale Sant'Andrea, Via di Grottarossa 1035-1039, 00189 Roma
NESMOS Department (Neurosciences, Mental Health and Sensory Functions), School of Medicine and Psychology, Sapienza University, Sant’Andrea Hospital, Via di Grottarossa 1035-1039, 00189 Rome, Italy
Neurobehavioral Clinical Research Section, Social and Behavioral Research Branch, National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH), Bethesda, Maryland 20892, USA
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