You can generate a surface from the hippocampus by first running recon-all on an anatomical image, then using mri_mc to tessellate the left and right hippocampi.
cheers Bruce
On Tue, 22 Feb 2011, Saad Shakeel wrote:
From: saad.akhun@hotmail.com To: fsregister@nmr.mgh.harvard.edu; freesurfer@nmr.mgh.harvard.edu Subject: Surface Generation Problem Pertaining to FreeSurfer Date: Tue, 22 Feb 2011 11:43:36 +0500
Hello, We are graduate students from Giki university, Pakistan. We are doing our Final Year Project on shape Analysis Techniques.Our Project steps are a. Segmentation b. Surface Generation c. Spherical Harmonics for shape Analysis. We need your help pertaining to Surface Generation module. I have certain problems:1. How to create : surface generation of hippo-campus ( Exists In Sub-cortical region of Human Brain)2. Can I use mri_vol2surf tool in FreeSurfer for this purpose. If so, then what are the advantages and dis-advantages Thankyou for your time. Kindly send me the supporter's email address if you don't deal with this kind of situation.