hard to tell from a single slice, but it looks like the skull stripping removed a bunch of the lh temporal lobe, so the control points can't recover it. You need to correct the watershed first.
cheers, Bruce On Mon, 20 Nov 2006, Richard Bantz wrote:
freesurfer,
Control points seem to work for some scans and not others. Theenclosed pictures illustrate a case in which cp's are added to wm but when re-run the wm does not take( 12 slices ). I have tried this twice and both times the same results, is there a fix?
Thankyou, Richard M Bantz