30 Aug
2020
30 Aug
'20
6:32 a.m.
External Email - Use Caution
Hello Freesurfer experts,
i’m attempting to run recon-all on only one hemisphere for further processing steps. For these I need wmparc.mgz, aparc.a2009s+aseg.mgz, aparc+aseg.mgz.
recon-all -sd ${TARGET_FOLDER} -subjid $SUBJECTID -i $T1 -qcache -openmp ${OMP_NUM_THREADS} -all -hemi lh -no-isrunning
It crashes before the files are made. How can I get these files? I attached the recon-all.log file.
Thank you,
Alina Rojas