How did you do the MC simulation? Does your mri_glmfit include a mask? I need command-lines ...
On 12/11/2015 03:18 PM, Karl Liu wrote:
Dear Freesurfer experts,
I repost my question from yesterday since it is not answered. Thanks in advance for any help.
After running Monte Carlo simulation from the command line, I noticed two cluster summary files are produced for each contrast: cache.th20.neg.sig.cluster.summary and mc-z.neg.th20.sig.cluster.summary. They are quite similar, with different number of surviving clusters in some cases. I am wondering which is the one to report final results. Will you explain a bit more about the differences between them?
Also, after reading the summary file, we still have to visualize the results. If the MC simulation is done in QDEC GUI, then the QDEC automatically presents the outcome from mc-z.neg.th20.sig.cluster.mgh, but I am not sure if this is the right file. I am using FS version 5.3 without tksurferfv. I found the tksurfer is running quite slow and unresponsive. Any other suggestions?
Thank you very much!
Karl
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