Hi Anthony, how are you creating the parcellation? Are you generating it off the orig.mgz? doug
Anthony Dick wrote:
Hello,
I am trying to train a cerebellar atlas based on 20 manually parcellated cerebellums. I have run the anatomical through freesurfer. When I try to load the overlay (parcellation) in tkmedit, the underlay (e.g., orig.mgz, T1.mgz) and the overlay (the parcellation) are no longer in alignment.
However, loaded in AFNI the underlay and overlay of course align. Is there a quick fix to get them in alignment?
Anthony