Re: [Freesurfer] label file from freesurfer 5.3

-- Y.J. Daniel Yang, Ph.D. Assistant Research Professor Autism and Neurodevelopmental Disorders Institute The George Washington University and Children’s National Health System E-mail: danielyang@gwu.edu mailto:danielyang@gwu.edu > On May 31, 2017, at 3:24 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: > > sure. Easy enough to do in matlab. > On Wed, 31 May 2017, Daniel Yang wrote: > >> Thanks, Bruce! It works now. >> Is it possible I can convert all the negative values in the label to >> something like 1? >> Best, >> Daniel >> -- >> Y.J. Daniel Yang, Ph.D. >> Assistant Research Professor >> Autism and Neurodevelopmental Disorders Institute >> The George Washington University and Children’s National Health System >> E-mail: danielyang@gwu.edu >> >> On May 31, 2017, at 1:52 PM, Bruce Fischl >> fischl@nmr.mgh.harvard.edu wrote: >> Hi Daniel >> it's because the values in your label are all negative and the default >> threshold is 0. Set it to -20 or something and you will see the label >> cheers >> Bruce >> On Wed, 31 May 2017, Daniel Yang wrote: >> >> Thank you. I just sent it to your mailbox. >> -- >> Y.J. Daniel Yang, Ph.D. >> Assistant Research Professor >> Autism and Neurodevelopmental Disorders Institute >> The George Washington University and Children’s National >> Health System >> E-mail: danielyang@gwu.edu >> >> On May 31, 2017, at 1:42 PM, Bruce Fischl >> fischl@nmr.mgh.harvard.edu wrote: >> sure, but I'll need the subject as well (at least one >> surface) >> On Wed, 31 May 2017, Daniel Yang wrote: >> >> Good to know, then, it must be the way I interact >> with FS 6.0.0 that is wrong. >> It’s a surface label. >> Can I send you the label file to see if you could >> view that in FS 6.0.0’s freeview using command line? >> -- >> Y.J. Daniel Yang, Ph.D. >> Assistant Research Professor >> Autism and Neurodevelopmental Disorders Institute >> The George Washington University and Children’s >> National Health System >> E-mail: danielyang@gwu.edu >> >> On May 31, 2017, at 1:37 PM, Bruce Fischl >> fischl@nmr.mgh.harvard.edu wrote: >> no, the label format should be backwards compatible. >> Was it a surface or volume label? >> On Wed, 31 May 2017, Daniel Yang wrote: >> >> Dear FreeSurfer experts, >> >> When I tried to use FreeSurfer 6.0.0’s freeview >> to open a label file generated by FreeSurfer 5.3, I could >> not see anything. >> >> Is it incompatibility issue going on here? >> >> Thanks, >> Daniel >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> The information in this e-mail is intended only for >> the person to whom it is >> addressed. If you believe this e-mail was sent to you >> in error and the e-mail >> contains patient information, please contact the >> Partners Compliance HelpLine at >> http://www.partners.org/complianceline . If the >> e-mail was sent to you in error >> but does not contain patient information, please >> contact the sender and properly >> dispose of the e-mail. >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> The information in this e-mail is intended only for the >> person to whom it is >> addressed. If you believe this e-mail was sent to you in >> error and the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was >> sent to you in error >> but does not contain patient information, please contact >> the sender and properly >> dispose of the e-mail. >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> The information in this e-mail is intended only for the person to whom >> it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in error > but does not contain patient information, please contact the sender and properly > dispose of the e-mail.