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Hello Freesurfer experts,
I have accomplished hippocampal subfields segmentation using Freesurfer 7.3.2. However, I have trouble when I try to gather all volumes of all subjects in one single txt file. I type quantifyHAsubregions.sh hippoSf T1 testhippo.txt
And the output that appears is:
Gathering results from subjects in: /Users/…/ALBION Using the prefix name: hippoSf Using the suffix name: T1 And writing them to: testhippo.txt
However, there is no txt file in my directory. I have tried included all subjects’ names in the script and I am still facing the same problem. Do you have any ideas to resolve this?
Thank you in advance, Best, Georgina