you will also need to recreate lh.MS073_R01_05-t2star_05iso_corr_disco_r0.8_depth0.5_fwhm3.mgh
On 5/21/18 12:45 PM, Barletta, Valeria wrote:
Hi Freesurfers, I sent this help request some days ago but had some problems in receiving the reply because of mailing list subscription issues... Sorry for submitting this request again:
I used the command mris_preproc to have all the surfaces of my cohort concatenated in fs average and I obtained this error message from several of my subjects:
#@# 3/11 MS073_R01_05/Bay8_3T/fs/MS073_R01_05 Fri May 11 14:24:58 EDT 2018 --------------
mri_surf2surf --srcsubject MS073_R01_05/Bay8_3T/fs/MS073_R01_05 --srchemi lh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi lh --trgsurfreg sphere.reg --tval /autofs/space/alicudi_002/users/mscat/users/valeria/CMEt2star/11Subj/tmp.mris_preproc.10346/MS073_R01_05.Bay8_3T.fs.MS073_R01_05.3.mgh --sval /autofs/space/alicudi_002/users/mscat/users/gabriel/R01_Automatic/MS073_R01_05/Bay8_3T/fs/MS073_R01_05/surf/overlay/lh.MS073_R01_05-t2star_05iso_corr_disco_r0.8_depth0.5_fwhm3.mgh --noreshape --no-cortex ERROR: dimension inconsistency in source data Number of surface vertices = 124277 Number of value vertices = 124470 Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg srcsubject = MS073_R01_05/Bay8_3T/fs/MS073_R01_05 srcval = /autofs/space/alicudi_002/users/mscat/users/gabriel/R01_Automatic/MS073_R01_05/Bay8_3T/fs/MS073_R01_05/surf/overlay/lh.MS073_R01_05-t2star_05iso_corr_disco_r0.8_depth0.5_fwhm3.mgh srctype = trgsubject = fsaverage trgval = /autofs/space/alicudi_002/users/mscat/users/valeria/CMEt2star/11Subj/tmp.mris_preproc.10346/MS073_R01_05.Bay8_3T.fs.MS073_R01_05.3.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 Reading source surface reg /autofs/space/alicudi_002/users/mscat/users/gabriel/R01_Automatic//MS073_R01_05/Bay8_3T/fs/MS073_R01_05/surf/lh.sphere.reg Loading source data
I saw that the problem could be related with the sphere file and I tried re-running -autorecon2 and -autorecon3 but it did not solve the problem. Could you please help me out with this? Thank you, Valeria
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