We'll need more information. What version of freesurfer was installed and on what Mac OS (with version)? Make sure you have all the latest Mac software updates for your Mac.
Nick
On Wed, 2009-05-13 at 10:09 +0200, Buchmann Andreas wrote:
Dear Freesurfer Experts,
I recently installed freesurfer. In my first subject, it did the largest part of the calculations (recon-all all) but ended up with the following error:
#@# Cortical ribbon mask Tue May 12 22:29:18 CEST 2009 /Applications/freesurfer/subjects/sleep001_RJ/mri \n mris_volmask --label_left_white 2 --label_left_ribbon 3 -- label_right_white 41 --label_right_ribbon 42 --save_ribbon -- save_distance sleep001_RJ \n dyld: Library not loaded: /usr/X11/lib/libfontconfig.1.dylib Referenced from: /Applications/freesurfer/lib/vtk/lib/vtk-5.2/libvtkHybrid.5.2.dylib Reason: Incompatible library version: libvtkHybrid.5.2.dylib requires version 5.0.0 or later, but libfontconfig.1.dylib provides version 3.0.0 Trace/BPT trap Darwin hpsystem.kispi.int 9.2.2 Darwin Kernel Version 9.2.2: Tue Mar 4 21:17:34 PST 2008; root:xnu-1228.4.31~1/RELEASE_I386 i386
recon-all exited with ERRORS at Tue May 12 22:29:20 CEST 2009
How can I fix this incompatibility?
Best regards
Andreas
Error log:
SUBJECT sleep001_RJ DATE Tue May 12 22:29:20 CEST 2009 USER EGI HOST hpsystem.kispi.int PROCESSOR i386 OS Darwin Darwin hpsystem.kispi.int 9.2.2 Darwin Kernel Version 9.2.2: Tue Mar 4 21:17:34 PST 2008; root:xnu-1228.4.31~1/RELEASE_I386 i386 $Id: recon-all,v 1.133.2.42 2009/04/01 15:53:05 nicks Exp $ /Applications/freesurfer/bin/recon-all PWD /Applications/freesurfer/subjects/sleep001_RJ/mri CMD mris_volmask --label_left_white 2 --label_left_ribbon 3 -- label_right_white 41 --label_right_ribbon 42 --save_ribbon -- save_distance sleep001_RJ
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