17 Apr
2020
17 Apr
'20
5:38 p.m.
Douglas,
Let's try with an example. See the two wayshttps://surfer.nmr.mgh.harvard.edu/fswiki/recon-all T2 image can be integrated with recon-all
Altogether:
recon-all -subject subjectname -i /path/to/input_volume -T2 /path/to/T2_volume -T2pial -all
autorecon3 only:
recon-all -subject subjectname -T2 /path/to/T2_volume -T2pial -autorecon3
Similar to the former, -hippocampal-subfields-T1https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields integrated with recon-all:
recon-all -all -s bert -hippocampal-subfields-T1
Now the question, compared to the latter, which autorecon[1/2/3] would accept -hippocampal-subfields-T1?
Does it make sense now?
-Tashrif .