Dear Freesurfers,
I ran into an issue while trying to preprocess some resting state data. As I wished to use the first slice to correct for motion, I typed in this command : preproc-sess -s 5167/ -fsd bold -stc down -surface fsaverage lhrh -mni305-2mm -fwhm 6 -*per-session. *
The error message was the following :
...... stc-sess Done 5167 To Surface ----------------------------- rawfunc2surf-sess -fwhm 6 -s 5167 -d /Applications/freesurfer/sessions -fsd bold -stc down -update instem fmcpr.down outstem fmcpr.down.sm6.fsaverage.hemi ------------------------------ 1/1 5167 1/1 5167 007 lh --------- Fri Nov 25 09:39:53 CET 2011 ERROR: could not determine file for /Applications/freesurfer/sessions/5167/bold/007/fmcpr.down
When I use the middle slice as a reference slice with the command *-per-run *I don't have any problems. Does any one know where this is coming from? I see some people already had the same issue a while ago, does any one know if a solution was found?
Cheers, Elisa Scariati