Hi Gonzalo, each of those commands has a --help flag which causes it to print out documentation. Have you looked at that yet? doug On 02/28/2013 01:20 PM, Gonzalo Rojas Costa wrote:
Hi:
I need to compute the GM and WM volume for each lobe... I know that for GM, I must use:
mri_annotation2label --subject bert --hemi rh --lobesStrict lobesfile
mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.lobesfile.stats -b -a ../label/lh.lobesfile.annot bert lh white
And, for WM I know that I must use the commands: mri_aparc2aseg and mri_segstats, but I don't know the options of each command that I must use... Could you please send me the complete commands for WM?...
Sincerely,
-- Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Clínica las Condes Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel: 56-9-97771785 www.clc.cl
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