Re: [Freesurfer] recon-all exited with error

Thanks Bruce. I have uploaded it but I would like to confirm that you received the ICBM_305.tar. For some reason I was not able to compress it any further.

To clarify, subjects 205 and now subject 202 have both failed after surface extraction.

best Trisanna

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

-- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology

On Tue, Jan 16, 2018 at 3:08 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:

you can put it on our ftp site:

https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange On Tue, 16 Jan 2018, Trisanna Sprung-Much wrote:

...

Hi Bruce Thanks for the speedy reply. Should I attach it here or is there a place

I can upload it to?

...

best Trisanna

-- Ph.D. CandidateMcGill University Integrated Program in Neuroscience Psychology

On Tue, Jan 16, 2018 at 11:44 AM, Bruce Fischl <

fischl@nmr.mgh.harvard.edu> wrote:

...

  hmmm, I've never seen label2label core dump before. Can you tar,

gzip and

...

  upload the entire subject dir?
  On Tue, 16 Jan 2018, Trisanna Sprung-Much
  wrote:

  > Hi there
  >
  > I ran Freesurfer 6.0 on a subject last night and it took about

12 hours (seemed to get

...

  to the very end) and then exited with
  > errors. I can open my surfaces so I think it ended roughly with

the atlas labelling. I

...

  attach the recon-all log file here.
  >
  > best wishes
  >
  > Trisanna
  > --
  > Ph.D. CandidateMcGill University
  > Integrated Program in Neuroscience
  > Psychology
  >
  >
  >
  >
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